Azide Plus Reagents

Kinetic comparison of conventional azide
(Figure 1). Kinetic comparison of chelating azide and non-chelating conventional azide.

Recent advances in the design of copper-chelating ligands, such as THPTA or BTTAA that stabilize the Cu(I) oxidation state in aqueous solution, improve the kinetics of the copper-catalyzed azide-alkyne cycloaddition (CuAAC) reaction and greatly increase the sensitivity of alkyne detection. Copper-chelating ligands have also been shown to increase the biocompatibility of the CuAAC reaction by preventing the copper ions from causing biological damage1. The next step in improving the CuAAC reaction was the development of copper-chelating azides as more reactive substrates. Since it is speculated that the Cu(I)-azide association is the rate-determining step in the CuAAC catalytic cycle2, the introduction of a copper-chelating moiety at the azide reporter molecule allows for a dramatic raise of the effective Cu(I) concentration at the reaction site, enhancing the weakest link in the reaction rate acceleration (Figure 2). It has been proposed that the high reactivity of chelating azides comes from the rapid copper-azido group interaction which occurs prior to Cu(I) acetylide formation, and this renders the deprotonation of alkyne in the rate-determining step3. This concept was successfully exploited to perform CuAAC reactions using pyridine-based copper-chelating azides (picolyl azides) as substrates4-6. Nevertheless, the copper-chelating motif of picolyl azide molecules is not complete, requiring the presence of a copper chelator (e.g. THPTA) to achieve significant improvement in the kinetics of the CuAAC reaction3, 4.

In efforts to improve the performance of the CuAAC reaction in complex media, Click Chemistry Tools developed new chelating azides with a complete copper-chelating system in their structure, termed “Azides Plus” (Figure 3). These azides are capable of forming strong, active copper complexes and are therefore considered both reactant and catalyst in the CuAAC reaction. Using these types of azides, the CuAAC reaction becomes a bimolecular reaction and displays much faster kinetics compared to the CuAAC reaction performed with conventional azides.

azide_probes-plus-structure

Comparative kinetic measurements for the CuAAC reaction (Figure 4) were performed using an agarose-alkyne resin labeling experiment (3.0 uM CuSO4, with (6.0 uM) or without THPTA ligand) using Cy5 Azide Plus, Cy5 Picolyl Azide, and Cy5 bis-Triazole Azide – the fastest copper-chelating azide that has been reported to date7. As expected, the picolyl azide containing the incomplete copper-chelating motif displays relatively slow reactivity, in particular without the presence of THPTA. The kinetic data shows that completing a copper-chelating moiety greatly enhances reactivity, and importantly does not require the presence of copper-chelating ligands. Interestingly, the copper-chelating azides developed by Click Chemistry Tools display almost identical reactivity in the CuAAC reaction compared to the most reactive copper-chelating azide reported up to now7, bis-triazole azide.

azide_probes-plus-structure

The new copper chelating azides allow the formation of azide copper complexes that react almost instantaneously with alkynes under diluted conditions. This unprecedented reactivity in the CuAAC reaction is of special value for the detection of low abundance targets, improving biocompatibility, and any other application where greatly improved S/N ratio is highly desired.

Selected References:
  1. Steinmetz, N. F., et al. (2010). Labeling live cells by copper-catalyzed alkyne–azide click chemistry. Bioconjug Chem., 21 (10), 1912-6. [PubMed]
  2. Rodionov, V. O., et al. (2007). Ligand-accelerated Cu-catalyzed azide-alkyne cycloaddition: a mechanistic report. J Am Chem Soc., 129 (42), 12705-12. [PubMed]
    Presolski, S. I., et al. (2010). Tailored ligand acceleration of the Cu-catalyzed azide-alkyne cycloaddition reaction: practical and mechanistic implications. J Am Chem Soc., 132 (41), 14570-6. [PubMed]
  3. Simmons, J. T., et al. (2011). Experimental investigation on the mechanism of chelation-assisted, copper(II) acetate-accelerated azide-alkyne cycloaddition. J Am Chem Soc., 133 (35), 13984-4001. [PubMed]
  4. Marlow, F. L., et al. (2014). Monitoring dynamic glycosylation in vivo using supersensitive click chemistry. Bioconjug Chem., 25 (4), 698-706. [PubMed]
  5. Clarke, S., et al. (2012). Fast, cell-compatible click chemistry with copper-chelating azides for biomolecular labeling. Angew Chem Int Ed Engl., 51 (24), 5852-6. [PubMed]
  6. Gaebler, A., et al. (2016). A highly sensitive protocol for microscopy of alkyne lipids and fluorescently tagged or immunostained proteins. J Lipid Res., 57 (10), 1934-1947. [PubMed]
  7. Gabillet, S., et al. (2014). Copper-chelating azides for efficient click conjugation reactions in complex media. Angew Chem Int Ed Engl., 53 (23), 5872-6. [PubMed]

Ordering information

Description Ex/Em Emission Color Pkg. Size Product # Price
AZDye 350 Azide Plus 346/445 Blue 1 mg 1477 – 1 $179.00
5 mg 1477 – 5 $545.00
25 mg 1477 – 25 $1680.00
AZDye 405 Azide Plus 402/424 Blue 1 mg 1474 – 1 $179.00
5 mg 1474 – 5 $545.00
25 mg 1474 – 25 $1680.00
PB Azide Plus 403/453 Blue 1 mg 1483 – 1 $179.00
5 mg 1483 – 5 $545.00
25 mg 1483 – 25 $1680.00
AZDye 488 Azide Plus 494/517 Green 1 mg 1475 – 1 $179.00
5 mg 1475 – 5 $545.00
25 mg 1475 – 25 $1680.00
AZDye 532 Azide Plus 532/554 Orange 1 mg 1476 – 1 $179.00
5 mg 1476 – 5 $545.00
25 mg 1476 – 25 $1680.00
AZDye 546 Azide Plus 554/570 Orange 1 mg 1478 – 1 $179.00
5 mg 1478 – 5 $545.00
25 mg 1478 – 25 $1680.00
AZDye 555 Azide Plus 555/572 Red 1 mg 1479 – 1 $179.00
5 mg 1479 – 5 $545.00
25 mg 1479 – 25 $1680.00
AZDye 568 Azide Plus 578/602 Red 1 mg 1480 – 1 $179.00
5 mg 1480 – 5 $545.00
25 mg 1480 – 25 $1680.00
AZDye 594 Azide Plus 590/617 Red 1 mg 1481 – 1 $179.00
5 mg 1481 – 5 $545.00
25 mg 1481 – 25 $1680.00
AZDye 647 Azide Plus 648/671 Near IR 1 mg 1482 – 1 $179.00
5 mg 1482 – 5 $545.00
25 mg 1482 – 25 $1680.00
AZDye 680 Azide Plus 678/701 Near IR 1 mg 1512 – 1 $189.00
5 mg 1512 – 5 $549.00
25 mg 1512 – 25 $1795.00